My list:
1. What happened to that bag of money in Abhijeet's house?
2. Who kidnapped Daya and why?
3. Why did the kidnappers take the bullet out of Daya's shoulder? Why did they want him alive?
4. Even Abhijeet was unconscious there. Why did they leave him out? If they wanted to 'destroy' CID as Kumar said it might have made sense to kidnap him too.
5. What was that jail in which trio were kept? A real jail or a criminals hideout?
6. Why was only Daya chained?
7. What was that important mission which ACP told Abhijeet about and which he didn't want even Daya to know about?
8. Where did YSPT start?
9. If it was YSPT, why did Chitroley pretend to arrest Abhijeet? Was there a hidden mike/camera in the bureau?
Please add your questions too.
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